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  4. F14 - Faculty of Biochemistry, Chemistry and Pharmacy
  5. Faculty of Biochemistry, Chemistry and Pharmacy: Research Data
  6. Single-molecule dynamics reveals ATP binding alone powers substrate translocation by an ABC transporter
 
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Title(s)
TitleLanguage
Single-molecule dynamics reveals ATP binding alone powers substrate translocation by an ABC transporter
en
 
Author(s)
NameORCIDGNDAffiliation
Christoph Nocker
Faculty of Biochemistry, Chemistry and Pharmacy 
 
Contributor(s)
NameORCIDGNDAffiliationRole
Matija Pečak
Faculty of Biochemistry, Chemistry and Pharmacy 
DataCollector
Tobias Nocker
Faculty of Biochemistry, Chemistry and Pharmacy 
DataCollector
Amin Fahim
Faculty of Biochemistry, Chemistry and Pharmacy 
DataCollector
Lukas Susac
Faculty of Biochemistry, Chemistry and Pharmacy 
DataCollector
Robert Tampé
Faculty of Biochemistry, Chemistry and Pharmacy 
ContactPerson
 
Project(s)
SFB 1507 - P18 Protein Assemblies and Machineries in Antigen Processing and ER Quality Control 
 
Faculty
14 Biochemistry, Chemistry and Pharmacy
 
Date Issued
25 July 2025
 
Publisher(s)
Goethe-Universität Frankfurt
 
Handle
https://gude.uni-frankfurt.de/handle/gude/636
 
DOI
10.25716/gude.01yy-edm7
 

Type(s) of data
Dataset
 
Language(s)
en
 
Subject Keyword(s)
  • ABC transporters

  • conformational dynami...

  • membrane proteins

  • membrane translocatio...

  • single-molecule FRET

  • single-molecule senso...

 
Abstract(s)
AbstractLanguage
ATP-binding cassette (ABC) transporters are molecular machines that are involved in a wide range of physiological processes, including antigen presentation by TAP, a key player in adaptive immunity. TAP and its bacterial homolog TmrAB use ATP to translocate peptides across membranes. To elucidate the mechanism of substrate transport, we employed a single-molecule FRET sensor to visualize single-translocation events by individual ABC transporters, overcoming the limitations of ensemble averaging. Using this approach, we tracked the membrane translocation of single peptides driven by a conformational switch from the inward- to the outward-facing state. In a slow-turnover TmrAB variant, even in the absence of Mg2+, we show that ATP binding alone is sufficient to drive peptide translocation. Structural analyses via cryogenic electron microscopy reveal that ATP binding induces an outward-facing conformation in both wild-type and mutant TmrAB, even without Mg2+. In wild-type TmrAB, this was sufficient for a single peptide translocation. However, Mg2+ was essential for the later stages of ATP hydrolysis and transporter resetting. Together, these results reveal a direct mechanistic link between ATP binding and substrate translocation at single-molecule resolution, providing new insights into the catalytic cycle of ABC transporters.
en
 
Description(s)
DescriptionLanguage
Supplementary material and Source data contributing to the paper 'Single-molecule dynamics reveals ATP binding alone powers substrate translocation by an ABC transporter'.
en
 

Funder(s)
NameType of identifierFunder identifierAward numberAward titleAward URI
European Research Council
101141396
ERC Advanced Grant
Collaborative Research Center
CRC1507/P18&Z02
 

License
Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) cclicense-logocclicense-logocclicense-logocclicense-logo
 

Views
17
Acquisition Date
Aug 26, 2025
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Downloads
5
Acquisition Date
Aug 26, 2025
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