Repository logo
  • Log In
    or
Goethe UniversityGUDe
  • Communities
  • Research Data
  • Organisations
  • Projects
  • People
  • Documentation
  • Log In
    or
  1. Home
  2. Goethe University Frankfurt
  3. Faculties
  4. F14 - Faculty of Biochemistry, Chemistry and Pharmacy
  5. Faculty of Biochemistry, Chemistry and Pharmacy: Research Data
  6. ATP-driven conformational dynamics reveal hidden intermediates in a heterodimeric ABC transporter
 
  • Details
  • Files
Options
Title(s)
TitleLanguage
ATP-driven conformational dynamics reveal hidden intermediates in a heterodimeric ABC transporter
en
 
Other Title(s)
Alternative TitleLanguage
Conformational landscape of a heterodimeric ABC transporter revealed by single-molecule analysis
en
 
Author(s)
NameORCIDGNDAffiliation
Pečak, Matija
Institute of Biochemistry 
Nocker, Christoph 
0009-0008-8835-6103
Institute of Biochemistry 
Tampé, Robert 
0000-0002-0403-2160
1245874411
Institute of Biochemistry 
 
Project(s)
European Research Council (ERC Advanced Grant 101141396 to R.T.)
Collaborative Research Center (CRC 1507/P18 to R.T.)
Research Training Group (GRK 1986/B4.7)
 
Faculty
14 Biochemistry, Chemistry and Pharmacy
 
DFG-Subject
201-01 Biochemistry
 
MeSH
Membrane Biochemistry, Membrane Biophysics
 
Date Issued
16 January 2026
 
Publisher(s)
Goethe-Universität Frankfurt
 
Handle
https://gude.uni-frankfurt.de/handle/gude/718
 
DOI
10.25716/gude.0jbq-k1q6
 

Type(s) of data
Dataset
 
Language(s)
en
 
Subject Keyword(s)
  • ABC transporters

  • conformational dynami...

  • membrane proteins

  • single-molecule analy...

 
Abstract(s)
AbstractLanguage
ATP-binding cassette (ABC) transporters are essential molecular machines whose conformational dynamics have largely been inferred from ensemble-averaged measurements. Resolving dynamic heterogeneity and transient intermediates, however, requires single-molecule approaches. Here, we use single-molecule Förster resonance energy transfer (smFRET) to directly monitor conformational changes of the heterodimeric type IV ABC transporter TmrAB, a functional homolog of the human antigen transporter TAP. Fluorophores positioned at the nucleotide-binding domains and the periplasmic gate were validated by accessible-volume simulations, fluorescence lifetimes, and ensemble FRET, demonstrating that these reporters reliably track conformational transitions. Single-molecule analysis distinguishes ATP-free and ATP-bound states and reveals ATP-dependent population shifts from micromolar to physiological ATP concentrations. Probing conformational dwell-times further uncovers an unexpectedly long ATP-bound dwell time of ~300 ms. Using complementary stabilization strategies–including a slow-turnover variant, Mg²⁺ depletion, or substrate trans-inhibition–we resolve a previously hidden outward-facing open state that rapidly interconverts with occluded intermediates under turnover conditions. These results provide the first single-molecule characterization of TmrAB and establish a general framework for dissecting ATP-coupled conformational dynamics in heterodimeric ABC transporters.
en
 
Description(s)
DescriptionLanguage
Raw Data Source File to:
Fig. 1 NBD
Fig. 1 PG
Fig. 2
Fig. 3
Fig. 4
Suppl. Fig. 1
Suppl. Fig. 2a
Suppl. Fig. 3
Suppl. Fig. 4
en
 

Funder(s)
NameType of identifierFunder identifierAward numberAward titleAward URI
European Research Council
ROR
https://ror.org/00d7nha28
101141396
Unraveling the Supramolecular Architecture of Molecular Machineries in Adaptive Immunity
https://cordis.europa.eu/project/id/101141396
German Research Foundation
ROR
https://ror.org/018mejw64
CRC 1507/P18
Protein assemblies and machineries in antigen processing and ER quality control
https://sfb1507.de/project/project-18/
German Research Foundation
ROR
https://ror.org/018mejw64
Research Training Group (GRK 1986/B4.7)
 

License
Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) cclicense-logocclicense-logocclicense-logo
 

Views
12
Last Week
2
Acquisition Date
Feb 1, 2026
View Details
Downloads
1
Acquisition Date
Feb 1, 2026
View Details

Datacite
Orcid
DSpace-CRIS
Legal Terms
  • Terms of Use
  • Publication Contract
  • Legal Notice
Privacy
  • Privacy Information
  • Cookie Settings
Help & Information
  • User Documentation
  • Contact Us
Resources for Developers
  • API Explorer (HAL Browser)
  • API REST Contract
  • API Python Client