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Title(s)
| Title | Language |
ATP-driven conformational dynamics reveal hidden intermediates in a heterodimeric ABC transporter | en |
Other Title(s)
| Alternative Title | Language |
Conformational landscape of a heterodimeric ABC transporter revealed by single-molecule analysis | en |
Author(s)
| Name | ORCID | GND | Affiliation |
Pečak, Matija | |||
1245874411 |
Project(s)
European Research Council (ERC Advanced Grant 101141396 to R.T.)
Collaborative Research Center (CRC 1507/P18 to R.T.)
Research Training Group (GRK 1986/B4.7)
Faculty
14 Biochemistry, Chemistry and Pharmacy
DFG-Subject
201-01 Biochemistry
MeSH
Membrane Biochemistry, Membrane Biophysics
Date Issued
16 January 2026
Publisher(s)
Goethe-Universität Frankfurt
Type(s) of data
Dataset
Language(s)
en
Abstract(s)
| Abstract | Language |
ATP-binding cassette (ABC) transporters are essential molecular machines whose conformational dynamics have largely been inferred from ensemble-averaged measurements. Resolving dynamic heterogeneity and transient intermediates, however, requires single-molecule approaches. Here, we use single-molecule Förster resonance energy transfer (smFRET) to directly monitor conformational changes of the heterodimeric type IV ABC transporter TmrAB, a functional homolog of the human antigen transporter TAP. Fluorophores positioned at the nucleotide-binding domains and the periplasmic gate were validated by accessible-volume simulations, fluorescence lifetimes, and ensemble FRET, demonstrating that these reporters reliably track conformational transitions. Single-molecule analysis distinguishes ATP-free and ATP-bound states and reveals ATP-dependent population shifts from micromolar to physiological ATP concentrations. Probing conformational dwell-times further uncovers an unexpectedly long ATP-bound dwell time of ~300 ms. Using complementary stabilization strategies–including a slow-turnover variant, Mg²⁺ depletion, or substrate trans-inhibition–we resolve a previously hidden outward-facing open state that rapidly interconverts with occluded intermediates under turnover conditions. These results provide the first single-molecule characterization of TmrAB and establish a general framework for dissecting ATP-coupled conformational dynamics in heterodimeric ABC transporters. | en |
Description(s)
| Description | Language |
Raw Data Source File to: Fig. 1 NBD Fig. 1 PG Fig. 2 Fig. 3 Fig. 4 Suppl. Fig. 1 Suppl. Fig. 2a Suppl. Fig. 3 Suppl. Fig. 4 | en |
Funder(s)
| Name | Type of identifier | Funder identifier | Award number | Award title | Award URI |
European Research Council | ROR | https://ror.org/00d7nha28 | 101141396 | Unraveling the Supramolecular Architecture of Molecular Machineries in Adaptive Immunity | https://cordis.europa.eu/project/id/101141396 |
German Research Foundation | ROR | https://ror.org/018mejw64 | CRC 1507/P18 | Protein assemblies and machineries in antigen processing and ER quality control | https://sfb1507.de/project/project-18/ |
German Research Foundation | ROR | https://ror.org/018mejw64 | Research Training Group (GRK 1986/B4.7) |
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